Season 2 - Episode Guide

With all of Villainville in jail, the Super Hero Squad is about to disband. Just then Captain Marvel disappears on his way to a peace mission, leading to hostility between the Kree and Skrull empires.

After the Super Hero Squad gets imprisoned by the Skrulls, Falcon's trump card, in the form of Scarlet Witch, is the only hope to stop the war between the Kree and the Skrull and to defeat Thanos and his Soul Gem.

A mishap between Thanos' new Time Gem and the Scarlet Witch's hex powers sends her back to World War II, where she must assist Captain America and the Invaders in stopping Red Skull from launching a rocket that will destroy Europe.

Slowly going insane in prison, Doctor Doom leads an escape plan where he distracts the Super Hero Squad using a Fin Fang Foom balloon and must lead his former allies (and two new ones) to escape from the grasp of Captain America and Ms. Marvel.

Jealous of the actions of Thor on Earth, Greek god Zeus challenges Odin to a battle between the god of Thunder and his son Hercules. Reptil sneaks along to help Thor out. Meanwhile, the Mayor of Super Hero City sends Invisible Woman to secretly broadcast the challenge for all of Super Hero City to see.

Thanos recruits Iron Man, Hulk, and the Scarlet Witch for a match against the Squadron Supreme of another dimension in a battle of heroes for the Grandmaster's Mind Gem.

Thanos has the Space Gem stolen from him by his older sister Nebula. She uses the Squad Helicarrier's Teleporter to escape, but ends up in the Negative Zone. Wolverine and H.E.R.B.I.E. team up as they were the only ones aboard the Helicarrier at the time. Having just returned from a trip to Six Eggs Over Easy amusement park, Iron Man & Falcon venture into the Zone to save them.

With Galactus attempting to eat the Skrull Throneworld and the Silver Surfer nowhere to be found, the Squad must hold off the devourer while finding their ally. Silver Surfer (who is slowly being corrupted by the Infinity Sword) turns out to have delayed Ronan the Accuser from coming to the Skrull Throneworld's aid.

Thanos uses the Mind Gem to control Hulk who goes on a sleepwalking rampage. The Super Hero Squad must enter the dream realm to fight back, even if they have to get help from Nightmare.

Enchantress places a love spell on Odin in an attempt to become queen of Asgard, but a forgotten rule forces him from the throne and makes his son Thor king instead, which both she and Loki try to take advantage of. Meanwhile, Magneto and Quicksilver discover Wanda has joined the Super Hero Squad and try to hitch a ride to try and take her back from them.

Thanos destroys the Nova Corp and takes Nova captive in order to get his hands on the Power Gem. This leads Iron Man to recruit Hercules and She-Hulk to help rescue him. Meanwhile, H.E.R.B.I.E. falls for Nova's messenger droid named Holoball.

An army of Wolverine clones invade Super Hero City forcing the real Wolverine and Reptil to get to the source with the help of Firestar. Outside of the other Super Hero Squad members rounding up the Wolverine clones, Reptil is unaware that his science fair partner and Firestar are the same person. It soon turns out that Egghead is responsible for the Wolverine clones.

Doctor Doom returns to Latveria in hopes to regroup, but discovers that his mother Cynthia "Coco" Von Doom is free from captivity, has brainwashed her captor Chthon, and has turned his castle into a day-spa trap that has ensnared the Super Hero Squad!

Thanos completes his Infinity Stone collection and the Super Hero Squad faces him in a final showdown for the fate of the universe. However, when requesting backup from one of their own, they encounter a betrayal that changes everything.

After being thrown into a portal by Dark Surfer, Thor befriends a Korbonite janitor named Beta Ray Bill, and must give up Mjolnir in order to prove that he has excellent fighting skills.

After being thrown into a portal by Dark Surfer, Falcon and H.E.R.B.I.E. find themselves in an alternate reality where Scarlet Witch is an evil empress who rules the world. With help from an elderly Magneto and a strong Reptil, Falcon and H.E.R.B.I.E. must try to convince Scarlet Witch that she is good and let the world be in peace.

After being thrown into a portal by Dark Surfer, a powerless Iron Man finds himself stranded on a world of monsters. There he meets Man-Thing and Werewolf by Night and battles Dracula and a gang of mummies led by N'Kantu, the Living Mummy.

After being thrown into a portal by Dark Surfer, Wolverine winds up on a world populated mainly by dinosaurs and encounters the High Evolutionary who asks him to help with a particular dinosaur named Devil Dinosaur in exchange for helping to get Wolverine back to Earth. Meanwhile, the Mayor's attempt to negotiate with the Dark Surfer makes things worse for Earth in the SHS' absence.

After being thrown into a portal by Dark Surfer, Hulk ends up on Sakaar and he is captured by the Red King for gladiator-themed tournament games. In order to be free of the Red King's cruelty, Hulk teams up with two other gladiators named Miek and Korg.

After being thrown into a portal by Dark Surfer, Scarlet Witch ends up in the Marvel 1602 universe where she finds a town under attack by pirate versions of Doctor Doom, M.O.D.O.K., and Abomination. Unfortunately for Scarlet Witch, the townspeople do not appreciate witches.

As Mister Fantastic and Ms. Marvel make a desperate attempt to rescue the Squaddies from their extra-dimensional exile, the evil Hydra besieges their distant Antarctic outpost.

When the Impossible Man's wife kicks him out, the irrepressible funster ends up crashing with the Super Hero Squad. To save his marriage, Impossible Man attempts to do something no one else has been able to do – defeat the Dark Surfer.

The Super Hero Squad suffers a time mishap that transforms several of the Squaddies into toddlers! It's up to the unaffected heroes to find a way to fix the Super Hero Toddlers before they are stuck that way forever.

Ms. Marvel leads the Squaddies on a mission to rescue her namesake Captain Marvel from the Dark Surfer. But when the fight traps the Squaddies in the Soul Stone, it's Captain Marvel who performs the ultimate sacrifice.

As the Dark Surfer prepares to end the universe, Ms. Marvel reveals a secret that could finally bring down the Infinity Gauntlet! Meanwhile, Doctor Doom prepares one final measure to try and stop the Dark Surfer with his own villainous team.

The Six Squaddies must each face the Dark Surfer one on one, in a final battle for the fate of reality that takes them to the edge of the universe-and a last stand at the cosmic Infinity Pool that brings everything full circle!